Red Perilla annotation database

Genome database for Perilla frutescens

This web site contains genomic data obtained from the study for "A highly contiguous genome assembly of red perilla (Perilla frutescens) domesticated in Japan" (Tamura, et al., DNA research, 2022, 30, 1-8.)

e.g.  kinase  PF01018  "GMP synthase"
OR: topoisomerase gyrase (default behavior)      AND: +"elongation factor" +transcription (Add + to each keyword)
NOT: "elongation factor" -transcription (Add - to exclude from search)      Prefix search: ribosom* (ribosome, ribosomal, etc..)

Our resources

Cultivar: Hoko-3
Genome specs.: 20 pseudochromosome
1.25 Gbp in total

Assembly and annotation version

The current version of the genome assembly is ver1.0 (Pfru_yukari_1.0).
The genome sequences are also available from the INSDC under the accession number BioProject:PRJDB14288.

The current version of the annotation is ver1.0(Pfru_yukari_1.0).

Citation

The data provided in this web site is freely available for academic purposes. Please cite the following article if you use the data obtained from the web site. DOI: 10.1093/dnares/dsac044
The annotation data also provided on figshare. DOI: 10.6084/m9.figshare.20780995.v2

Inquiries and feedback

Genome Informatics Laboratory, National Institute of Genetics. yn @ nig.ac.jp